The insulated carriers should work best. (EMS, OR, I imagine REI and LL Bean back one too) That said, I'm using a wool sock for the one I am drinking upside down in an EMS open sleeve on my hip belt. At times they've been a little slushy but I also get by eating some snow as I usually run hot & am not typically worried about hyperthermia.
The two other bottle are in a pocket attached to my pack (used to have insulated pockets but I think I've gone through those) upside down in double 300 fleece mitts (the mitts that are so thick you can't use your hands for anything) I then carry a small thermos with hot water, easiest to run through the keurig in the AM at 192 degrees.
For those putting boiling water in Nalgene, assuming you are using BPA free bottles. However, what they replaced BPA with was a very similar compound, BPS. We may find out that it's no better and hot liquids in BPA or BPS bottles should be frowned upon. See the following for more info.
http://www.environmentalhealthnews.org/ehs/news/2013/bpa-alternative-alters-hormones